FastQCFastQC Report
Wed 8 May 2024
EGAF00007960556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523307
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25510.48747675838465754No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20430.3904018100273835No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19470.3720569378968751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18590.35524080511057565No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18450.3525655112582098No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16190.30937862478430445No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG13040.2491845131060735No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12570.24020316945884537No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12330.23561695142621827No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG12040.2300752713034605No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9030.17255645347759538No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8600.16433947950247177No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7830.14962536331445977No Hit
GGTGCTGCGGGTGCCACCACCTTTCGGGGAACCACCACCTTTCG7540.144083683191702No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7390.14121729692131005No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7160.13682217130670907No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6960.13300032294618647No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6490.12401897929895836No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6420.12268133237277544No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6070.1159930977418609No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5880.11236234179936443No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5640.1077761237667373No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5570.10643847684055438No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5320.10166116638990115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)