FastQCFastQC Report
Wed 8 May 2024
EGAF00007960557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523307
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42070.8039258026359288No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41420.7915047954642305No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25970.4962670096138595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18360.35084567949597467No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16590.31702232150534965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16300.31148064138259185No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12800.24459829507344635No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12700.24268737089318507No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12180.23275056515582632No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9720.18574183032139835No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG9470.18096451987074508No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9240.1765693942561441No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8540.163192924994315No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7670.1465678846260417No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7640.1459946073719633No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7050.13472015470842164No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6940.1326181381101342No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6270.1198149461023835No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6270.1198149461023835No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.11847729917620058No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5980.11427326597962571No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5720.10930486311094634No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5640.1077761237667373No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5580.10662956925858053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)