FastQCFastQC Report
Wed 8 May 2024
EGAF00007960559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509199
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43890.8619419912450731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41630.8175585576562404No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40360.792617424621808No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25160.4941093757057653No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17610.34583728561917837No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16020.314611772607566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16000.3142189988589923No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12810.25157158596148066No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12070.23703895726425228No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11290.22172078106987644No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9140.17949760309819932No Hit
GCTGGTCACCTGATCGGTAAAGGCGCGAAAG8800.17282044937244576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.15887698129807795No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7080.13904190699510408No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7010.137667198875096No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6810.13373946138935858No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6470.127062307663605No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5980.11743935082354835No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5960.11704657707497462No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5860.11508270833210592No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5750.11292245271495034No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5620.11036942334922102No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5550.10899471522921295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5280.10369226962346745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)