FastQCFastQC Report
Wed 8 May 2024
EGAF00007960560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541616
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25950.47912173938731495No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21930.40489941212962693No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG19090.35246373814658355No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18710.34544769726152846No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17550.32403030929662346No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16800.3101828601813831No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16290.3007665947830197No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15780.2913503293846563No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15690.28968863549082746No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG14330.264578594428525No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12170.2246979409766329No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11940.22045138991462587No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11670.21546630823313934No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11300.20863490000295415No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10130.18703287938317922No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9970.1840787569052613No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9940.18352485894065168No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9800.1809400017724735No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9800.1809400017724735No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9320.17207763433871967No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9090.16783108327671264No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8990.16598475672801394No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8930.16487696079879471No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8830.163030634250096No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8450.15601459336504092No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8350.15416826681634221No Hit
AGACTGCAGCAGGGACATGATCTGTTGCGGACGGTTGTTCGCCT7930.14641369531180762No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7800.14401347079849933No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7770.1434595728338897No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7750.14309030752414995No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7630.1408747156657115No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7550.13939765442675253No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT7260.13404330743552628No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6950.1283196951345603No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6830.12610410327612182No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6700.1237038787628135No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6340.11705710318749817No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6330.11687247053262827No Hit
GCAGCCGATAATTTCGTTATCCAGCAGAGTAATGCCGTTGGCGG6130.11317981743523087No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5840.1078254704440046No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5790.10690230716965525No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5750.10616377655017577No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5700.10524061327582641No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5600.10339428672712771No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5590.10320965407225784No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5550.10247112345277834No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5550.10247112345277834No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5500.101547960178429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)