FastQCFastQC Report
Wed 8 May 2024
EGAF00007960561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541616
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26240.4844760863785412No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26030.480598800626274No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG24040.4438569023071696No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20830.3845898200939411No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC20540.3792354731027148No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG20270.37425039142122835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17180.3171989010664382No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16950.31295235000443117No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG16830.3107367581459927No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG16120.2976278396502319No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC15400.2843342884996012No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG14480.2673480842515731No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13550.2501772473486751No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13180.24334583911848987No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12950.23909928805648284No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11780.21749726743670794No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11040.20383445097633748No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10950.20217275708250865No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10810.19958789991433046No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10480.1934950223036247No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10230.18887920593187793No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10220.18869457327700806No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10190.18814067531239845No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9980.18426338956013116No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9950.18370949159552155No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9350.1726315323033293No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9260.17096983840950047No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8880.16395379752444536No Hit
CTGGACGCTACCCGCGAGTCTCTGGATGTTA8820.16284600159522614No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8790.16229210363061652No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG8750.16155357301113704No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8650.15970724646243833No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8630.1593379811526986No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8290.153060470887123No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8050.1486292871702461No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7730.1427210422144102No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7280.13441257274526602No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7040.12998138902838913No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6950.1283196951345603No Hit
ATCGCTGATCTGATCGCACGTGGTGACGACA6730.12425777672742312No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6420.11853416442645713No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6270.11576467460340907No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6220.1148415113290597No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6190.11428761336445009No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6030.11133349088653216No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5960.11004106230244307No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5960.11004106230244307No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5900.10893326637322384No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5900.10893326637322384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5850.10801010309887447No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5770.10653304185991551No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5640.10413281734660718No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5540.10228649079790848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)