FastQCFastQC Report
Wed 8 May 2024
EGAF00007960562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517038
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23500.4545120474703987No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21190.409834480250968No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19070.368831691287681No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG18040.34891052495174435No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG16580.32067275519400895No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16480.31873866137498597No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15050.2910811197629575No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14930.2887602071801299No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG14870.2875997508887161No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13980.27038631589941164No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11540.2231944267152511No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11470.221840561041935No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11310.21874601093149829No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11020.21313713885633165No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10050.1943764288118088No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9680.18722028168142382No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9460.18296527527957326No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9400.18180481898815948No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9250.178903678259625No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9080.17561571876728596No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8870.1715541217473377No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8480.16401115585314813No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8470.1638177464712458No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8190.1584022837779815No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8150.15762864625037232No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8090.15646818995895853No Hit
AGACTGCAGCAGGGACATGATCTGTTGCGGACGGTTGTTCGCCT7770.15027908973808501No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7750.14989227097428043No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7460.1442833988991138No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7420.1435097613715046No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7390.1429295332257977No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7110.1375140705325334No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6880.13306565474878054No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6830.13209860783926908No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6740.13035792340214838No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6650.12861723896502772No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6290.12165450121654502No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5950.1150785822318669No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5870.11353130717664853No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5720.11063016644811408No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5590.10811584448338421No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5530.10695538819197041No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5520.10676197881006812No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5490.10618175066436124No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5300.10250697240821757No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5290.10231356302631528No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5250.1015399254987061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)