FastQCFastQC Report
Wed 8 May 2024
EGAF00007960564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540354
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26010.48135111426953436No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG22500.4163936974649952No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG19950.3692024117522957No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18250.33774155461049604No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17970.33255976637537615No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17360.3212708705774363No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16430.30405993108221646No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16130.29850801511601655No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG16010.29628724872953655No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG14010.259274475621537No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12580.2328103428493173No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11900.22022599999259743No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11740.2172649781439575No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11470.21226825377437755No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10320.1909859092372778No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10020.18543399327107785No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10010.18524892940553786No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9960.18432361007783785No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9400.17396003360759799No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG9400.17396003360759799No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT9300.172109394952198No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9220.17062888402787801No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG9020.16692760671707807No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8790.1626711378096581No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8730.1615607546164181No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG8050.14897641175969828No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7980.1476809647009183No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7830.14490500671781834No Hit
AGACTGCAGCAGGGACATGATCTGTTGCGGACGGTTGTTCGCCT7790.14416475125565834No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7710.14268424033133836No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7560.13990828234823838No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7520.13916802688607838No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7320.13546674957527843No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6870.12713887562597853No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6850.12676874789489853No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6520.1206616403320786No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6430.11899606554221863No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6240.11547985209695866No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6140.11362921344155869No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6120.11325908571047869No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5970.11048312772737871No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5930.10974287226521873No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5850.10826236134089874No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5710.10567146722333877No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5560.10289550924023881No Hit
GCAGCCGATAATTTCGTTATCCAGCAGAGTAATGCCGTTGGCGG5550.10271044537469881No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5500.10178512604699883No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5490.10160006218145883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)