FastQCFastQC Report
Wed 8 May 2024
EGAF00007960565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540354
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26040.48190630586615435No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25520.4722829848580745No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG24650.4561824285560947No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG21220.39270552267587544No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG21100.3904847562893955No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC19870.36772190082797573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17920.33163444704767614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17530.3244169562916162No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG17070.31590401847677635No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG16200.29980346217479653No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC15610.28888469410793666No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG14250.26371600839449694No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC13290.24594987730265716No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13190.24409923864725716No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12970.24002783360537722No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12040.22281689411015743No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11720.21689485041287748No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC11310.20930723192573758No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10870.20116442184197766No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10820.20023910251427768No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10700.1980183361277977No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10500.19431705881699776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10110.18709956806093783No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10030.18561905713661786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9510.17599573612853797No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9350.173034714279898No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9300.172109394952198No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9250.171184075624498No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9130.16896330923801803No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8810.1630412655407381No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8780.16248607394411813No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8640.15989517982655813No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8550.15822960503669817No Hit
CTGGACGCTACCCGCGAGTCTCTGGATGTTA8520.15767441344007815No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8450.1563789663812982No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7550.1397232184826984No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7430.13750245209621842No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7200.13324598318879846No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7050.13047002520569848No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG7020.1299148336090785No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6610.12232721512193859No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6470.11973632100437862No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6170.11418440503817867No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6030.1115935109206187No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6010.1112233831895387No Hit
ATCGCTGATCTGATCGCACGTGGTGACGACA6000.11103831932399871No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5830.10789223360981874No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5720.10585653108887876No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5680.10511627562671878No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5670.10493121176117878No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5640.1043760201645588No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5580.10326563697131881No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5550.10271044537469881No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5530.10234031764361881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)