FastQCFastQC Report
Wed 8 May 2024
EGAF00007960566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524965
Total Bases23 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24160.4602211576009829No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21050.4009791128932405No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18620.3546903126875125No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG18610.354499823797777No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG17610.3354509348242264No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16640.31697351251988226No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15690.2988770679950092No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG15170.2889716457287629No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14470.27563742344727743No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13330.25392169001742976No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG12310.23449182326440812No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT11720.22325297877001327No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11100.21144266760641187No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11080.21106168982694085No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10230.1948701341994228No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9500.18096444524873087No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9450.18001200080005333No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9290.17696417856428523No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9230.17582124522587222No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8980.17105902298248454No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8750.1666777785185679No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8660.16496337851094833No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8560.1630584896135933No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8470.16134408960597374No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8260.1573438229215281No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG8210.1563913784728506No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7780.1482003562142238No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7770.14800986732448831No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7560.14400960064004267No Hit
AGACTGCAGCAGGGACATGATCTGTTGCGGACGGTTGTTCGCCT7460.1421047117426876No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7390.14077128951453907No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7230.13772346727877097No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6740.12838951168173116No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG6730.12819902279199566No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6510.12400826721781452No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6490.1236272894383435No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6440.12267484498966598No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5930.11295991161315516No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5890.11219795605421314No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5860.11162648938500663No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5860.11162648938500663No Hit
GCAGCCGATAATTTCGTTATCCAGCAGAGTAATGCCGTTGGCGG5850.11143600049527112No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5750.10953111159791606No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5660.1078167115902965No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5400.10286400045717334No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5370.10229253378796681No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5360.1021020448982313No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC5350.10191155600849582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)