FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524965
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43970.8375796481670207No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25330.4825083577000371No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24000.4571733353652148No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG22720.43279075747907003No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG20440.38935929061937463No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC19270.3670720905203204No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG19200.3657386682921719No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16220.30897297915099103No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15950.30382977912813236No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG15830.30154391245130624No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG15670.2984960902155382No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14610.2783042679035745No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG12950.24668311220748051No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC12720.24230186774356388No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12470.2375396455001762No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12440.23696817883096968No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12210.23258693436705302No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11900.22668177878525236No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10190.1941081786404808No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10130.19296524530206777No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10130.19296524530206777No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10120.19277475641233224No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9930.18915546750735765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9920.18896497861762213No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9660.18401226748449895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9200.17524977855666568No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9080.17296391187983962No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG8690.16553484518015488No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8500.16191555627518026No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8390.1598201784880897No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8380.1596296895983542No Hit
CTGGACGCTACCCGCGAGTCTCTGGATGTTA8360.15924871181888317No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8340.15886773403941215No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8310.15829626737020563No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG7580.1443905784195137No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7240.13791395616850646No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7070.13467564504300286No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6950.1323897783661768No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG6680.12724657834331812No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6570.12515120055622755No Hit
ATCGCTGATCTGATCGCACGTGGTGACGACA6320.1203889783128399No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6060.11543626717971675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6060.11543626717971675No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5950.11334088939262618No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5840.11124551160553561No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5810.11067404493632908No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5750.10953111159791606No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5750.10953111159791606No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5720.10895964492870953No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5630.10724524492108999No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5430.10343546712637985No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5350.10191155600849582No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5260.10019715600087624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)