FastQCFastQC Report
Wed 8 May 2024
EGAF00007960568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552662
Total Bases24.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT21600.39083562828636675No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT19860.35935164711885387No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16880.30543080580897547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16870.30524986338847254No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15890.28751750617918365No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15760.28516525471264537No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14310.258928603739718No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12540.2269017953106962No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11690.21152168956794568No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10330.1869135203795448No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA9960.18021865082093574No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8830.15977215730410269No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8610.15579142405303784No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7880.14258262735632268No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7460.1349830456951989No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7370.13335456391067235No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT7240.13100231244413402No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6370.1152603218603776No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6140.11109864618880978No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6110.11055581892730096No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6100.110374876506798No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6040.10928922198378031No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5830.10548943115321842No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5800.1049466038917096No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5720.103499064527686No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5560.10060398579963883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)