FastQCFastQC Report
Wed 8 May 2024
EGAF00007960569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552662
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22710.41092023696219393No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG22410.4054919643471055No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG21750.3935497645939109No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17610.3186396025056906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16400.29674556962483395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15480.2800988669385628No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15470.27991792451805986No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13830.25024336755557647No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.23576797391534066No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11750.21260734409096338No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11480.2077218987373838No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC11260.20374116548631896No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9530.17243812673930903No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9140.16538137233969408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8920.16140063908862923No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8110.14674430302789046No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7800.14113508799229907No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7640.13824000926425192No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7570.1369734123207313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7520.13606870021821657No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6800.12304084594200433No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6570.11887917027043654No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6280.11363184007585107No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6260.11326995523484518No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6050.10947016440428327No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6040.10928922198378031No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5910.10693697051724199No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5820.10530848873271548No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5730.10368000694818895No Hit
GTCGACGCGAGCTTCGAAGATCTGCTGCAAG5710.10331812210718305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)