FastQCFastQC Report
Wed 8 May 2024
EGAF00007960570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529948
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT21230.4006053424109536No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT17650.33305154467985537No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17480.32984368277642334No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15710.2964441794289251No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14530.2741778438639263No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14420.2721021685146467No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12900.24342010914278384No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12510.23606089654079268No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10920.20605795285575187No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA10170.19190562092884583No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9550.1802063598692702No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8700.16416705035211002No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8660.16341225931600836No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT8040.1517129982564327No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7270.13718327081147583No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7220.13623978201634876No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6700.12642749854702726No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6280.11850219266795987No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5920.11170907334304497No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5830.11001079351181625No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5820.10982209575279084No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5710.10774642040351128No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5630.10623683833130798No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5430.10246288315079971No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5350.10095330107859639No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5300.10000981228346932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)