FastQCFastQC Report
Wed 8 May 2024
EGAF00007960571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529948
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44010.8304588374708463No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22060.4162672564100629No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20850.3934348275679878No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG19720.372111980798116No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16060.30304860099481457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14510.27380044834587547No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14130.26662993350290976No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13710.2587046276238424No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12890.2432314113837584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12060.22756949738464904No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11840.22341814668608995No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC11080.20907711700015852No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10400.19624566938643037No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9090.17152626295410114No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8550.1613365839667288No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7830.147750345316899No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7580.14303290134126367No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7480.14114592375100954No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7000.13208843131778966No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6830.12888056941435766No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6680.12605010302897643No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6180.11661521507770574No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5810.10963339799376544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5690.10736902488546046No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5650.10661423384935881No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5600.10567074505423173No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5550.10472725625910466No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5460.10302897642787594No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5460.10302897642787594No Hit
GTCGACGCGAGCTTCGAAGATCTGCTGCAAG5420.1022741853917743No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5340.10076460331957098No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5340.10076460331957098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)