FastQCFastQC Report
Wed 8 May 2024
EGAF00007960572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551150
Total Bases24.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT22740.4125918533974417No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT18320.3323958994828994No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16890.30645014968701806No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16300.29574525991109496No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15680.2844960537058877No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14210.2578245486709607No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13460.24421663793885515No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12160.2206295926698721No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11450.20774743717681213No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG10450.18960355620067132No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA10400.1886963621518643No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9470.17182255284405334No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8500.15422298829719677No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT8300.1505942121019686No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7600.13789349541867008No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6710.12174544134990475No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6360.11539508300825548No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6350.11521364419849406No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6300.11430645014968702No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6260.11358069491064139No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6070.11013335752517463No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6020.1092261634763676No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5990.10868184704708338No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5630.1021500498956727No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5590.10142429465662706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)