FastQCFastQC Report
Wed 8 May 2024
EGAF00007960573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551150
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22850.4145876803048172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22490.4080558831534065No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG20710.3757597750158759No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17490.3173364782727025No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16020.29066497323777557No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15000.27215821464211193No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14150.2567359158123923No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13730.24911548580241316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12760.2315159212555566No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC11670.2117390909915631No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11570.209924702893949No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC11410.2070216819377665No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9940.1803501769028395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.1772657171368956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8540.1549487435362424No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8540.1549487435362424No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8090.14678399709697906No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.13299464755511203No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6910.1253742175451329No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6730.12210831896942757No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6700.12156400254014334No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6400.11612083824730109No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6330.11485076657897124No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6160.1117663068130273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6030.10940760228612899No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5890.10686745894946931No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5870.10650458132994647No Hit
GTCGACGCGAGCTTCGAAGATCTGCTGCAAG5820.10559738728113943No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5790.1050530708518552No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5670.1028758051347183No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5650.10251292751519551No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5560.10087997822734282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)