FastQCFastQC Report
Wed 8 May 2024
EGAF00007960574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536451
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT20700.38586935246648807No Hit
GCGTTCCAGGACGTTACCTTGGGAACGGTTCTCCGCATCACGCT18470.34429985217662007No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16610.3096275335491965No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16000.29825650432192313No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14670.2734639324001633No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14470.26973572609613927No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13540.2523995667824275No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12340.2300303289582832No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10990.20486493640612097No Hit
GCGCTGACGACGTTCCAGAACGTTGCCCTGGGATTTGTTTTCGA9810.18286851921237912No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9760.18193646763637314No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8780.16366825674665533No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8410.15677107508421087No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT7810.14558645617213872No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7560.1409261982921087No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6830.12731824528242094No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6660.12414926992400052No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6140.11445593353353802No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6120.11408311290313561No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5970.11128695817511758No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5920.11035490659911157No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5910.11016849628391037No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5890.10979567565350795No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT5710.10644028997988633No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5540.10327131462146588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)