FastQCFastQC Report
Wed 8 May 2024
EGAF00007960575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536451
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43720.8149858980596549No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21980.40972987281224194No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20700.38586935246648807No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG20600.38400524931447605No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16620.3098139438643977No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14920.2781241902801933No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14270.26600751979211523No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG13910.25929674844487194No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13390.24960341205440945No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12130.226115712339058No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11500.2143718624813823No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10830.20188237136290174No Hit
GACGTAGAGAACAAATCTCAGGGTAACGTGC10700.19945903726528608No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9240.17224313124591062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8160.1521108172041808No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8060.1502467140521688No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC7760.14465440459613274No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7390.13775722293368828No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.13663876104248104No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6740.12564055244561012No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6600.12303080803279329No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.11818413983756205No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5970.11128695817511758No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5860.10923644470790436No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5850.10905003439270315No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5620.1047625971430755No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5600.1043897765126731No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5590.1042033661974719No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5450.10159362178465507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)