FastQCFastQC Report
Wed 8 May 2024
EGAF00007960580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498650
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT34530.6924696681038804No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30980.621277449112604No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29610.5938032688258298No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27690.5552993081319563No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21690.4349744309636017No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19990.40088238243256796No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19720.39546776295999203No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18380.36859520705905946No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17210.34513185601123036No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16580.3324977439085531No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG16480.3304923292890805No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15560.31204251478993283No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14560.29198836859520705No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14170.28416725157926404No Hit
ACCCAGCGGGATGGCCGGCAGAGAATAGCCATCCGGAAAAACGG13860.277950466258899No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13470.270129349242956No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12900.2586984859119623No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12140.2434573348039707No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10890.21838965206056352No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10770.21598315451719646No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10680.21417828135967112No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9830.19713225709415422No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9690.19432467662689262No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9190.18429760352952973No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8610.17266619873658878No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8510.17066078411711622No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8340.16725157926401282No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8330.1670510378020656No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8320.1668504963401183No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8220.16484508172064574No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7920.158828837862228No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7850.15742504762859721No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7770.15582071593301913No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7710.15461746716133562No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7550.15140880377017948No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7280.14599418429760352No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7110.14258497944450013No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7080.1419833550586584No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6790.13616765266218792No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6550.13135465757545373No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6410.1285470771081921No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6380.12794545272235036No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6320.1267422039506668No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6310.12654166248871954No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG6270.12573949664093054No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6220.12473678933119423No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6100.12233029178782713No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG6050.12132758447809085No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5680.11390755038604232No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5650.11330592600020055No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5490.11009726260904443No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5460.10949563822320264No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5340.10708914067983556No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5310.10648751629399379No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5280.10588589190815201No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5260.1054848089842575No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5220.10468264313646847No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5140.1030783114408904No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5100.10227614559310137No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5050.10127343828336507No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5040.10107289682141783No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5030.10087235535947056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)