FastQCFastQC Report
Wed 8 May 2024
EGAF00007960587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550194
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACTGTCCTCTGGCTACCGCATCAACCGTG11130.20229228235858626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11020.2002929875643864No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.18248108848878758No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9970.18120880998338768No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA8800.15994358353598911No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG7480.13595204600559074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7240.13158994827279105No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6540.11886716321879191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6240.11341454105279229No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.10341806708179296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)