FastQCFastQC Report
Wed 8 May 2024
EGAF00007960588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529907
Total Bases23.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC10520.19852540162707796No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9940.18758008480733412No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8080.15247958604056938No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA7080.13360835014445932No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6630.12511629399120977No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT5950.11228385358185494No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5920.11171771650497163No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5390.1017159614800333No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5360.10114982440314998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)