FastQCFastQC Report
Wed 8 May 2024
EGAF00007960589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529907
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43680.824295583942088No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10730.2024883611652611No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10310.19456244208889484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.1824848511153844No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7310.13794873440056463No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7100.1339857748623815No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG7020.1324760759906927No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6330.11945492322237676No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5970.11266127829977714No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5420.1022820985569166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)