FastQCFastQC Report
Wed 8 May 2024
EGAF00007960590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549601
Total Bases24.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC10410.18941013571663806No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9800.1783111748341069No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8550.1555674025338382No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA6900.12554562309748343No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6480.11790371560459316No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT6170.1122632600741265No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6160.11208130989572435No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5930.10789645579247491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)