FastQCFastQC Report
Wed 8 May 2024
EGAF00007960591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549601
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11150.20287444891839718No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10670.194140840355094No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9840.17903897554771553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9780.17794727447730263No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7890.14355869075929628No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7190.13082217827114578No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG7170.1304582779143415No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.1257275732758856No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.11753981524778884No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5660.10298380097561685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)