FastQCFastQC Report
Wed 8 May 2024
EGAF00007960592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536229
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC10320.19245508915034434No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9570.1784685274388368No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8100.1510548664842819No Hit
CAGGGAGTTAGTCAGAGAGGTCAGGCCGCTAGACGCGGTCTGCA6730.1255060804245947No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6720.12531959293510794No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6330.11804658084512401No Hit
ATCGCTGCTGTTGTTGGTAGAGTTCGCGGCCTGAACGGACAGTT6210.1158087309712828No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5860.10928166883924592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)