FastQCFastQC Report
Wed 8 May 2024
EGAF00007960593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536229
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42890.799844842408747No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG10550.19674430140854002No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10480.19543888898213266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9730.18145232727062505No Hit
GCGGCTGGTCTGGCAATTTCTCAGCGCATGA7640.14247644196789058No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6970.12998178017227716No Hit
AAACGTATCAACAGCGCTGCCGACGACGCAG6860.1279304177879227No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.1262520303825418No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6300.1174871183766637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)