FastQCFastQC Report
Wed 8 May 2024
EGAF00007960594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554499
Total Bases24.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG30710.5538332801321554No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23800.42921628352801355No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22640.4082964982804297No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21670.3908032295820191No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20840.3758347625514203No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19750.35617737813774236No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18060.32569941514772793No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18040.3253387291951834No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17280.3116326629984905No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16520.29792659680179767No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15890.28656498929664437No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13810.24905365023201123No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12820.23119969558105607No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG12690.2288552368895165No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11930.2151491706928236No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11150.2010824185435862No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11010.19855761687577436No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10860.19585247223169022No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10600.1911635548486111No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9890.1783592035332796No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9350.16862068281457676No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC9080.16375142245522534No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8550.1541932447127948No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8510.1534718728077057No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT8430.1520291289975275No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8130.14661883970935927No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG8070.1455367818517256No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8050.14517609589918107No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8050.14517609589918107No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG7820.14102820744491873No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7730.13940512065846827No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC7420.13381448839402776No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7220.13020762886858228No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7190.12966659993976545No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7010.12642042636686449No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6960.12551871148550314No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6960.12551871148550314No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6830.12317425279396357No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6820.12299390981769127No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6640.11974773624479035No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6580.11866567838715669No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6570.11848533541088443No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6430.11596053374307257No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6300.113616075051533No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6180.11145195933626573No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6180.11145195933626573No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6140.1107305874311766No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC5960.10748441385827567No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5860.10568098409555293No Hit
ACGCAGAATGGAGGTCGGGGTGGAACGGTCAGACTGCGGTGGAG5700.10279549647519653No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5690.10261515349892425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)