FastQCFastQC Report
Wed 8 May 2024
EGAF00007960595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554499
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49830.8986490507647444No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36020.6495954005327331No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG29650.5347169246472943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24580.44328303567725097No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG24060.4339052009110927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22500.40577169661261786No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21190.3821467667209499No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20130.3630304112360888No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17290.3118130059747628No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC17090.3082061464493173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15230.2746623528626742No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14310.25807079904562497No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13750.24797159237437758No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13720.24743056344556077No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12380.22326460462507597No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC12230.22055945998099186No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA11050.19927898878086345No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10100.18214640603499735No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA10020.18070366222481918No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9940.17926091841464095No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9600.17312925722138364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.1662762241230372No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9080.16375142245522534No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8890.16032490590605214No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC8870.15996421995350757No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8540.15401290173652252No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC8510.1534718728077057No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8440.15220947197379978No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC8290.14950432732971566No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8290.14950432732971566No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8130.14661883970935927No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA7910.1426512942313692No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA7650.13796237684829007No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7630.13760169089574553No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7570.13651963303811188No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7440.1341751743465723No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7140.12876488505840405No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA7100.12804351315331497No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6990.12605974041431997No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6900.12443665362786949No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6790.12245288088887445No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6770.12209219493632992No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6760.12191185196005765No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6750.12173150898378536No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6590.11884602136342896No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6570.11848533541088443No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6090.10982887254981524No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5980.10784509981082022No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5640.10171343861756288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)