FastQCFastQC Report
Wed 8 May 2024
EGAF00007960597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533190
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48830.9158086235675837No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45900.8608563551454453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32380.6072882087060898No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG27060.5075113936870534No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23320.4373675425270541No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG22590.4236763630225623No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21720.40735947785967475No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20540.38522853016748254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18660.34996905418331176No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16710.3133967253699432No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14810.2777621485774302No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14500.2719480860481254No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13720.257319154522778No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13240.2483167351225642No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12610.23650105965978357No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12330.23124964834299216No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC11490.21549541439261802No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA10620.1991785292297305No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC9980.18717530336277874No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9910.1858624505335809No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9160.17179617022074684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8970.16823271254149552No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8650.16223109960801965No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8250.15472908344117484No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA8220.15416643222866147No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8050.1509780753577524No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7830.14685196646598775No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7690.14422626080759204No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7680.14403871040342092No Hit
GGTTGGGGTCGTCGCTACGAACCAGCACCGA7600.14253830717005195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.14085035353251185No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7420.13916239989497176No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC7390.1385997486824584No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7330.1374744462574317No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7260.13616159342823383No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6720.12603387160299329No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6660.12490856917796657No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6580.12340816594459761No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6560.12303306513625537No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6480.1215326619028864No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA6460.12115756109454415No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6430.12059490988203081No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6360.11928205705283294No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6360.11928205705283294No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT6350.11909450664866182No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5860.1099045368442769No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5600.10502822633582776No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5420.10165231906074758No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5380.10090211744406309No Hit
GCAGTGGCGAGCAAATATGGTCTGAGCCTGG5360.10052701663572086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)