FastQCFastQC Report
Wed 8 May 2024
EGAF00007960598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554252
Total Bases24.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG29770.5371202990697372No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24570.4433001594942373No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22730.4101022639521373No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21650.39061654265568735No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21270.3837604555328623No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19940.3597641506029748No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA18160.32764879513289985No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18050.32566413833418734No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18050.32566413833418734No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16400.29589428635349985No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15260.27532602498502484No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13990.2524122601271624No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13300.23996304929887485No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG12870.2322048454493624No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11800.21289954749824988No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11600.20929108059149992No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11240.20279584015934993No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10420.18800112584167492No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9840.17753657181209992No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9570.17266514148798742No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9530.17194344810663742No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC8920.16093762404104991No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8340.15047307001147492No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8280.14939052993944993No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8010.14451909961533743No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7810.14091063270858742No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG7800.14073020936324993No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7790.14054978601791243No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT7740.13964766929122494No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7710.13910639925521243No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG7680.13856512921919992No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7240.13062650202434994No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7170.12936353860698743No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7160.12918311526164994No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC7130.12864184522563743No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7130.12864184522563743No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6870.12395083824686243No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6800.12268787482949993No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6700.12088364137612495No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6620.11944025461342493No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6420.11583178770667493No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6340.11438840094397495No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6220.11222332079992493No Hit
ACGCAGAATGGAGGTCGGGGTGGAACGGTCAGACTGCGGTGGAG6190.11168205076391244No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6110.11023866400121243No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6090.10987781731053743No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6070.10951697061986246No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6010.10843443054783744No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5750.10374342356906244No Hit
ACCAGAGTAACGGCTCACTGCCTGGCGCTGCGGGCTGCACAGGG5660.10211961346102494No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5600.10103707338899996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)