FastQCFastQC Report
Wed 8 May 2024
EGAF00007960600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539400
Total Bases23.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG29070.5389321468298109No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23890.442899517982944No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22480.41675936225435667No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21330.39543937708565075No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20820.38598442714126807No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18530.3435298479792362No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA17400.3225806451612903No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17370.3220244716351502No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16480.3055246570263256No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16340.3029291805710048No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14630.27122728958101594No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13260.24582869855394882No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13090.24267704857248795No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG12820.23767148683722655No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11350.2104189840563589No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11230.20819428995179828No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11060.20504263997033742No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10930.20263255469039673No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10100.18724508713385243No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9340.1731553578049685No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9300.1724137931034483No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC8970.16629588431590656No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8050.1492398961809418No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8050.1492398961809418No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7990.14812754912866147No Hit
GGACTGGCCACGGTGGCCACCATCGTAGCGTTCCCAGCCGCTCG7870.14590285502410086No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7680.14238042269187987No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT7490.13885799035965887No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7270.13477938450129776No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7250.13440860215053765No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7110.13181312569521692No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7060.13088616981831666No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7060.13088616981831666No Hit
CGGGAAAGACAGATCTTCGTCAGAAGAAGAGCTGGATGCCGCAG6960.12903225806451613No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6860.1271783463107156No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6850.12699295513533554No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6750.12513904338153503No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6680.12384130515387469No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6450.11957730812013348No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG6450.11957730812013348No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA6380.11827956989247312No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6370.11809417871709307No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6210.11512791991101223No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6020.11160548757879124No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5980.11086392287727104No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5960.11049314052651094No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5770.10697070819428996No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC5560.10307749351130886No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5540.10270671116054876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)