FastQCFastQC Report
Wed 8 May 2024
EGAF00007960602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511700
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25400.4963846003517686No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG23930.46765683017393No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19590.38284150869650185No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19190.3750244283760016No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17540.34277897205393787No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16750.3273402384209498No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15450.30193472737932386No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15340.29978503029118625No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15030.2937267930427985No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13930.2722298221614227No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13340.2606996286886848No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG12140.23724838772718387No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG11740.2294313074066836No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11720.2290404533906586No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11590.22649990228649602No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11230.21946452999804575No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11020.21536056282978308No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9610.18780535470001952No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9390.18350596052374438No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9370.18311510650771937No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9060.17705686925933165No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8670.16943521594684385No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8460.1653312487785812No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7730.15106507719366816No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7220.1410982997850303No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7220.1410982997850303No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7200.1407074457690053No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7120.13914402970490522No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7120.13914402970490522No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6950.1358217705686926No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6900.13484463552863005No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA6850.13386750048856752No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC6740.13171780340042993No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6440.12585499316005472No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6440.12585499316005472No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6050.11823333984756694No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5980.11686535079147937No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5550.10846198944694156No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5290.10338088723861637No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5290.10338088723861637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)