FastQCFastQC Report
Wed 8 May 2024
EGAF00007960603

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960603
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511700
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33590.656439319914012No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33160.6480359585694744No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30830.6025014657025601No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG23130.45202266953292947No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21200.41430525698651555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19450.3801055305843268No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18800.36740277506351376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17690.34571037717412545No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16900.33027164354113736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15650.30584326753957397No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12660.24741059214383426No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC12370.24174320891147158No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11970.23392612859097126No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11930.23314442055892126No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11620.2270861833105335No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11530.22532734023842094No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11490.22454563220637094No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11050.2159468438538206No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10960.21418800078170805No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10730.20969317959742034No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10040.19620871604455734No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9360.18291967949970686No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9160.17901113933945673No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9000.17588430721125659No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8450.16513582177056868No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8340.1629861246824311No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7980.15595075239398085No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG7910.15458276333789328No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7540.14735196404143053No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA7490.146374829001368No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7420.14500683994528044No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7220.1410982997850303No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT7180.14031659175298025No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6890.13464920852061757No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6740.13171780340042993No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6700.1309360953683799No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6010.1174516318155169No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5860.1145202266953293No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5760.11256595661520422No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5660.11061168653507915No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5420.10592143834277896No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5380.10513973031072894No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5270.10299003322259137No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5150.10064490912644126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)