FastQCFastQC Report
Wed 8 May 2024
EGAF00007960604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490194
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24680.5034741347303312No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG23310.4755260162303088No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18390.37515759066818444No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18070.36862956298934707No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17280.3525134946572174No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16130.3290533951863956No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15260.31130531993455657No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15090.30783730523017416No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14400.2937612455476811No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13320.27172915213160503No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12560.2562250863943663No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12040.2456170414162556No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11440.23337698951843558No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11390.23235698519361725No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11000.2244009514600342No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10700.21828092551112416No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10560.21542491340163283No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9690.19767683814979375No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8920.18196877154759136No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8700.17748075251839068No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8300.169320717919844No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8270.16870871532495296No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7780.15871267294173327No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC7760.15830467121180594No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7690.15687666515706028No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7600.15504065737238726No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7260.14810462796362256No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7140.14565661758405857No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6990.14259660460960355No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6920.14116859855485786No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA6760.1379045847154392No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6610.1348445717409842No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6110.12464452849280082No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6090.12423652676287347No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6050.1234205233030188No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5860.11954450686870913No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5720.11668849475921779No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5720.11668849475921779No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5290.10791645756578008No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4990.10179643161687005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)