FastQCFastQC Report
Wed 8 May 2024
EGAF00007960605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490194
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40570.8276315091575988No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31540.6434187280954071No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31420.6409707177158431No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29150.5946625213690906No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG21730.4432938795660493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19390.3955576771645512No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18240.3720975776937294No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17740.36189753444554607No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16930.345373464383489No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15910.3245653761571949No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14270.29110923430315344No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11910.24296503017172794No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11730.2392930146023819No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11630.23725300595274523No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11600.23664100335785426No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11140.22725696356952554No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11140.22725696356952554No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10960.2235849480001795No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA10940.2231769462702522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10820.2207289358906882No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9830.20053285025928508No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9440.19257681652570208No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8980.18319277673737336No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8370.17074872397458965No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8150.16626070494538897No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8050.1642206962957523No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7920.16156868505122463No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG7660.15626466256216928No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7300.14892063142347725No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7240.14769662623369523No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6930.14137259941982153No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT6900.14076059682493053No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6890.14055659595996686No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6840.13953659163514853No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6410.1307645544417108No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6080.12403252589790982No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5760.11750449821907244No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5610.11444448524461744No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5530.1128124783249081No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC5490.11199647486505343No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5080.10363243940154307No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA4970.10138842988694273No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4950.10098042815701538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)