FastQCFastQC Report
Wed 8 May 2024
EGAF00007960606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509506
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24380.4785027065432007No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG23850.46810047379226155No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19260.37801321279827915No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19170.3762467959160442No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17640.34621770891805004No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17270.3389557728466397No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15450.3032348981169996No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15430.3028423610320585No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15160.29754311038535364No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13560.26614014359006566No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12430.24396179829089354No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12410.24356926120595243No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG12350.2423916499511291No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12000.2355222509646599No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11740.23041926886042557No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11600.22767150926583787No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10440.20490435833925408No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9930.19489466267325606No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9560.1876327266018457No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9110.17880064219067096No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8990.17644541968102437No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8850.17369766008643667No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8090.15878125085867487No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8030.1576036396038516No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8030.1576036396038516No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7840.15387453729691114No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7320.14366857308844252No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7300.14327603600350144No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA6990.13719171118691437No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6870.13483648867726777No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6800.13346260887997394No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC6520.12796708969079854No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6450.12659320989350467No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT6300.12364918175644644No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6240.12247157050162315No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6220.12207903341668203No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6160.12090142216185874No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT5670.11128426358080179No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5160.10127456791480376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)