FastQCFastQC Report
Wed 8 May 2024
EGAF00007960608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495139
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24640.49763803699567194No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG23660.4778456150697077No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18850.3807011768412506No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18210.36777551354266175No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17380.3510125439523043No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16930.341924186945484No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15590.31486107941406355No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15050.30395505100587916No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14060.2839606655908745No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13520.27305463718269013No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12150.24538563918414827No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG11640.23508550124308525No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11350.22922856006091216No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10950.22115002049929414No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10810.21832253165272783No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10560.21327344442671653No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10440.21084988255823112No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9450.19085549714322644No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9260.18701819085145788No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC8940.18055535920216342No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8730.17631412593231396No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8670.17510234499807123No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8150.1646002435679678No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8010.16177275472140146No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7620.15389617864882385No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7570.15288636120362162No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC7370.1488470914228126No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7260.1466254930433676No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT7030.14198033279543726No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA7010.14157640581735634No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6860.13854695348174956No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6530.13188215834341466No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6260.1264291441393225No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6110.12339969180371571No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5950.1201682759790685No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5680.11471526177497633No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5510.11128188246128864No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5400.10906028408184368No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5330.10764653965856052No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5310.10724261268047963No Hit
CTGGGAGAACAGACCCTTCATCTTACGCGGCGGTGGCAGTACTT5310.10724261268047963No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5150.1040111968558324No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)