FastQCFastQC Report
Wed 8 May 2024
EGAF00007960609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495139
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41640.840975968364439No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31080.6277025239377225No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30690.6198259478651449No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30560.6172004225076191No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG22320.45078250753828725No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19350.3907993512932732No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19170.38716400849054505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18630.37625798008236067No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17770.35888912002488194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17140.3461654202153335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13990.2825469211675913No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12080.24397189476086512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12050.24336600429374378No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11630.23488353775404483No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC11570.2336717568198021No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11100.22417947283490092No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10770.217514677696566No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10740.21690878722944465No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10400.21004202860206933No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10300.2080223937116648No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10240.2068106127774221No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9620.19428887645691412No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9120.18419070200489154No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC8550.17267878312958584No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8520.17207289266246448No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8510.17187092917342403No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8020.1619747182104419No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG7620.15389617864882385No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7400.14945298188993394No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7310.14763531048856987No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT7280.14702942002144853No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA7160.14460585815296312No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6990.14117247883927544No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6600.13329590276669784No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6380.1288527060078079No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6340.12804485205164612No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6250.12622718065028204No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5890.1189564950448258No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5750.11612900619825947No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5480.11067599199416729No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5330.10764653965856052No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5230.10562690476815602No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA5150.1040111968558324No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5080.10259745243254924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)