FastQCFastQC Report
Wed 8 May 2024
EGAF00007960619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507500
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20060.39527093596059115No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10110.19921182266009851No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7330.14443349753694582No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11073891625615763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)