FastQCFastQC Report
Wed 8 May 2024
EGAF00007960623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509183
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20940.4112470369199286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10190.2001245131907389No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7200.14140299263722475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6150.12078172287762945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)