FastQCFastQC Report
Wed 8 May 2024
EGAF00007960626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484582
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8620.17788527019162909No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7630.15745529136451622No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6860.14156530783231736No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6490.13392986119996203No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6270.12938986590504806No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5860.1209289655827084No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)