FastQCFastQC Report
Wed 8 May 2024
EGAF00007960627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484582
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10850.223904313408257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7790.16075710612445365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7190.1483753007746883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6920.14280348836729387No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6610.1364062222699151No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6130.12650077799010281No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6110.12608805114511062No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5180.10689625285297431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)