FastQCFastQC Report
Wed 8 May 2024
EGAF00007960628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468892
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8500.18127841805788966No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7340.1565392457111659No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6810.14523600317343865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6100.1300939235474267No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5810.12390913046074577No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5620.11985702464533411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)