FastQCFastQC Report
Wed 8 May 2024
EGAF00007960629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468892
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22670.48348020439674805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10980.23416906238536805No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7130.1520606024415004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6950.14822176535321566No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6750.14395639081067707No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6090.12988065482029978No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5910.12604181773201503No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5320.11345896283152623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)