FastQCFastQC Report
Wed 8 May 2024
EGAF00007960630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485548
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8660.17835517806684406No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7650.15755393905442922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7420.1528170232397209No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6420.1322217370888151No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6130.12624910410505244No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5730.11801098964469012No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)