FastQCFastQC Report
Wed 8 May 2024
EGAF00007960631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485548
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11040.22737195910599983No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7810.16084918483857416No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7260.14952177745557596No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7240.14910987173255785No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6390.13160387850428792No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6110.12583719838203433No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5870.12089432970581694No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5620.11574550816809048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)