FastQCFastQC Report
Wed 8 May 2024
EGAF00007960632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472609
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8430.17837155026671095No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7880.16673402326235853No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6980.14769079725523637No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6500.13753441005143785No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6170.13055189384882643No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5850.12378096904629408No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG4750.10050591503758921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)