FastQCFastQC Report
Wed 8 May 2024
EGAF00007960633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472609
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22520.4765038329782124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10840.22936507768578254No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7900.1671572060625168No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7240.15319217365729387No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6980.14769079725523637No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6470.13689963585120046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5950.12589688304708543No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5040.10664206563988413No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC4950.10473774303917191No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)