FastQCFastQC Report
Wed 8 May 2024
EGAF00007960642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516030
Total Bases21.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11170.21646028331686143No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9960.19301203418405904No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8380.162393659283375No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8250.1598744259054706No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8230.15948685153963918No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7680.14882855647927448No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7500.14534038718679146No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6970.1350696664922582No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6760.13100013565102803No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6360.12324864833439916No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG6200.1201480534077476No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5840.11317171482278163No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5580.10813324806697286No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5210.10096312229909113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)