FastQCFastQC Report
Wed 8 May 2024
EGAF00007960643

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960643
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516030
Total Bases17 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17880.34649148305331084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13010.25211712497335426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11490.2226614731701645No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9210.17847799546537993No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8570.16607561575877372No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8310.16103714900296495No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7890.1528980873205046No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7570.14669689746720152No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7510.14553417436970717No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7450.14437145127221288No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7000.13565102804100537No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6910.13390694339476386No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC6300.12208592523690483No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5950.11530337383485456No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.10406371722574269No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5220.10115690948200685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)